evSOLve.JEvolution.chromosomes

Class PermChromosome

java.lang.Object

evSOLve.JEvolution.chromosomes.Chromosome

evSOLve.JEvolution.chromosomes.IntChromosome

evSOLve.JEvolution.chromosomes.PermChromosome

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

Direct Known Subclasses:

SubsetPermChromosome

public class PermChromosome
extends IntChromosome

See Also:

Serialized Form

Field Summary

Fields inherited from class evSOLve.JEvolution.chromosomes.IntChromosome

bases, high, low

Fields inherited from class evSOLve.JEvolution.chromosomes.Chromosome

BIASED, crossoverPoints, crossoverRate, LAPLACE, length, mutationRate, soupType

Constructor Summary

Constructors

Constructor and Description
PermChromosome() The standard constructor with default length of chromosome.
PermChromosome(Element c) Creates a PermChromosome via XML.
PermChromosome(int length) Constructs a chromosome of given length.

Method Summary

Methods

Modifier and Type	Method and Description
void	doCrossover(Chromosome father) PMX Crossover.
void	doMutation() Mutate by swapping two bases saving the permutation property.
void	mixSoup() Initial creation of alleles.

Methods inherited from class evSOLve.JEvolution.chromosomes.IntChromosome

clone, equals, fromString, getBases, getHigh, getLow, hashCode, setHigh, setLow, toString, toXml

Methods inherited from class evSOLve.JEvolution.chromosomes.Chromosome

create, getCrossoverPoints, getCrossoverRate, getLength, getMutationRate, getSoupType, setCrossoverPoints, setCrossoverRate, setLength, setMutationRate, setSoupType

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

PermChromosome

public PermChromosome()

The standard constructor with default length of chromosome.

PermChromosome

public PermChromosome(int length)

Constructs a chromosome of given length.

Parameters:

length - the number of bases

PermChromosome

public PermChromosome(Element c)

Creates a PermChromosome via XML.

Parameters:

c - an XML Chromosome element

Method Detail

doMutation

public void doMutation()

Mutate by swapping two bases saving the permutation property.

Overrides:

doMutation in class IntChromosome

doCrossover

public void doCrossover(Chromosome father)

PMX Crossover.

Overrides:

doCrossover in class IntChromosome

Parameters:

father - A parent Chromosome.

mixSoup

public void mixSoup()

Initial creation of alleles.

Overrides:

mixSoup in class IntChromosome